My Winter CDPC Training in Ireland
I arrived in National University of Ireland, Maynooth on Monday 20th September 2010 to the very warm welcome of Doireann Mckenzie, the CDPC administrator. Although, I had expected the weather to be too cold, it turned out to be warmer than I expected. However, this did not prepare me for what was to come in months of November and December. I met my fellow CDPC trainees Michael and Titus from Tanzania and Madina from Uganda who showed me allowed Maynooth and generously introduced me to my first Irish food of Lassagne. The following day Doireann, took Slyvia and I to the campus for registration. I was very impressed with the magnificent look of the Southern Campus, with the impressive look of St Patrick Cathedral and its serenic environment. Thereafter, she took us to the Department of Immunology and Global Health where she introduced us to Dr Noel Murphy, the Co-chairman of CDPC who together had a great discussion on our training needs as requested in our applications. He outlined my training plans in Bioinformatics, Genomics and Proteomics and he kindly offered to take us to Dr Martina Schroeder, who was our training coordinator. Martina was very kind and welcoming and she put herself in our shoes. She had a very clear plan for my training and she had made all the necessary arrangements with Department of biology where I was to train in bioinformatics, genomics, programming and proteomics and systems biology.

Part of Southern campus of NUIM just after my arrival in September, and before the onset of winter.
I started my training on Wednesday the 22nd September 2010 where I attended my first lecture in bioinformatics. Later in the weeks to come, I attended series of lectures in immunology, Perl and UNIX programming lectures as well as practicals in the Department of Biology. In addition, Dr Martina introduced me to Dr David in the Bioinformatics unit who kindly agreed to guide me on bioinformatics aspects of my PhD research work, which I am researching on comparative genomics of signaling pathways in human Schistosomiasis. David was very kind and helpful to me as he introduced me to UNIX and Perl programming languages which indeed speeded up my bioinformatics retrieval and analysis of genomic sequences of my interest. The success of the skills I acquired in computational biology was very evident by the speed in which I was able to acquire my initial data which I used to write a paper titled, “Schistosomes encodes Short-Chain Dehydrogenases/Reductases and Glucose-Methanol-Choline Oxidoreductases with high similarity to lepidopteran ecdysteroids biosynthetic enzymes” was sent on 15th October 2010, about 3 weeks after starting my CDPC training and accepted in 14th December 2010 for the Joint International Society of Computational Biology (ISCB) and African Society of Bioinformatics and Computational Biology (ASBCB) Conference on Bioinformatics in Cape Town, South Africa from the 9th -11th March 2011. I have also been awarded a pre-conference travel fellowship to attend a 2 days workshop in bioinformatics and Young Researchers Forum at the same place. Moreover, the bioinformatics unit in National University of Ireland courtesy of Dr David has kindly allowed me to use their UNIX server and their bioinformatics resources upto June 2011, six months after ending my CDPC training in Ireland. This will enable me to complete some of the research work which I had not completed during my 3 months training period in Ireland. This demonstrates that the CDPC network created while in Ireland is still very helpful to me even now when back to my country, Kenya. Through CDPC fellowship, I also got four books in bioinformatics and programming which will be a great asset for me and entire department back at home.
Dr Martina also introduced me to Professor Padraic Fallon, who agreed to host me in his laboratory at the Institute of Molecular Medicine, Trinity College of Health Sciences St. James Hospital. I spent nine weeks of my CDPC training period in Professor Padraic’s laboratory where I learnt several techniques such as genotyping and helminth biology. I also interacted with PhD and Post-doctorate students working in the laboratory through which I immensely learnt a lot during this period.

On the snow outside the Labs at the Institute of Molecular Medicine in St. James Hospital, Trinity College Dublin
During my training, I also presented a seminar on “Human Schistosomiasis in the department, and also presented a paper during the under diseases of poverty titled, “Schistosomiasis: Exploring new control strategies using genomic information”. In addition, I also attended various seminars within the university on various issues ranging from Intellectual Property Rights, Drug discovery and genomics. On 4th November, I attended a microsymposium on “New Horizons for Neglected Diseases” at Trinity College Dublin which was very educative covering aspects on helminthes, protozoan parasites, tuberculosis and the Irish partnership for tackling diseases of poverty. Towards the end of my training on 6th and 7th December 2010, I also attended a computational biology and Innovation PhD symposium 2010 at Conway Institute, University College of Durblin. This symposium was very educative with very impressive quality papers and posters in computational biology, bioinformatics and system biology. It was great moment for me to learn the various PhD research projects going on in Ireland in Irish universities.

With Dr Noel Murphy (right) Co-chair CDPC, Titus, Michael (Tanzania), Prof Robert Thonton (South Africa), Slyvia (Uganda) and Dr Martina (Left) during the Irish Forum for Global Health Biennial Conference, 2010 at NUIM.
In addition to my involvement in learning science, I also participated in outreach education programme for second grade transition students. Thank to Joe Clowry the coordinator of CDPC Outreach programme. My first outreach workshop was in CBS, Portlaoise on Thursday 18th November 2010 which was facilitated CDPC, Schools Across Borders and Self Help Africa. Joe, Slyvia and Patsy and I presented three workshops to the transition high school students from four schools namely; Presentation Portlaoise, Colaiste Bhride, Carnew and CBS Portlaoise. I was very excited to meet and interact with these high school students and their teachers who were also happy to interact and learn more about Kenya and African issues especially in on HIV AIDS. In addition, this was also my great opportunity to visit and see the country side. Joe, Slyvia and I did 3 workshops of 70 minutes each on HIV AIDS. The other workshops were on fair trade and conflicts resolution. I was very impressed with this program since it exposes the student to developmental and global issues at very early age. This program exposes the student to various issues in the world such as trade, equality, cultural differences and respect for humanity. Indeed, I thought this kind of program would have a very great impact if introduced in Kenyan high schools and could accelerate national development as it promote innovativeness and developmental knowledge unlike our Kenyan education which emphasizes more on examinations. However, unlike in Kenya where students as young as primary school, majority of the high school students in Ireland we met for the workshops from these schools were not too conversant with HIV AIDS information. The students were interested in learning how Kenya has coped with issues of HIV AIDS mainly on awareness, testing and stigma. There is need therefore for support of such workshops in other schools in Ireland in future to create awareness on HIV AIDS.


With some of the workshop facilitators at CBS Portlaoise School during school outreach workshop
My second workshop was on 25th November at Buncrana, Co. Donegal. We left Maynooth on 24th November for a journey of about 5 hours to Co. Donegal. In Donegal, the weather was very cold and the snow had started falling on the top of the mountains. We could not resist the beautiful site of the snow and we requested Patsy to stop so that we could have a better view of the snow this being our first time to see them. However, this did not prepare me for the coming days when the snow and ice was going to be part of my live during the rest of my stay. I enjoyed the view of the country side with the sheep farming and also learnt a lot about the struggle for liberation of Irish republic, especially with the painting on buildings in Derry or LondonDerry. Joe and Patsy were very kind in explaining the history of the liberation for independence. We enjoyed the beautiful beaches and mountains and waterfall of Donegal. The workshop was facilitated by CDPC, Worldwise Schools and Self Help Africa and involved Moville Community College, Moville, Carndonagh Community College, Carndonagh Scoil Mhuire, Buncranarana College, Buncrana, Buncrana/ Glengad Youthreach– schools. I was very impressed with these programmes especially the Worldwise Schools programme where schools in Ireland and other parts of the developing countries are involved in joint innovative projects in development. Such a model, I thought could globalize education and remove the cultural barriers and spur development.

At Derry or LondonDerry on our way to Donegal for second-level school outreach programme where we stopped to learn the liberation history of Irish republic.

At the beautiful beaches of Peninsula at Co. Donegal during one of the CDPC outreach programme.

On the street of Carndonagh during a break after the workshop at Co. Donegal, enjoying the beautiful view of the Donegal mountains.
Just a few days towards the end of my training period, I participated in my last workshop on HIV AIDS at Parish Centre, Carlow where we presented 3 workshops to Presentation Carlow, St Leo’s Carlow and CBS, Carlow. Similar issues such as HIV testing, stigma and awareness raised during previous workshops also arose.
I also visited various shopping malls, the beautiful beaches at Bray, Kilmainham Gaol and Irish museum of modern art. I sincerely enjoyed every moment of my stay and the friendliness and hospitality of the Irish people. Despite the harsh cold weather towards the end of my training, everything was fantastic and I learnt a lot during my training period. Thanks to CDPC.